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Sample GSM1333881 Query DataSets for GSM1333881
Status Public on Aug 07, 2015
Title Sample DM05
Sample type genomic
 
Channel 1
Source name Sample DM05
Organism Homo sapiens
Characteristics Stage: Primary Tumor
tissue: FFPE
Extracted molecule genomic DNA
Extraction protocol Qiagen Dneasy. Manufacturer's instructions.
Label Cy5
Label protocol Bioprome aCGH genomic labeling kit. Manufacturer's instructions.
 
Channel 2
Source name Pooled Normal male genomic DNA
Organism Homo sapiens
Characteristics Sex: Male
tissue: Blood
Extracted molecule genomic DNA
Extraction protocol Qiagen Dneasy. Manufacturer's instructions.
Label Cy3
Label protocol Bioprome aCGH genomic labeling kit. Manufacturer's instructions.
 
 
Hybridization protocol Agilent Oligo aCGH hybridization kit. Manufacturer's instructions.
Scan protocol Feature Extraction version 9.1 (Agilent Technologies)
Data processing Agilent Feature Extraction Software (v 9.1) was used for background subtraction and LOWESS normalization.
 
Submission date Feb 24, 2014
Last update date Aug 08, 2015
Contact name Alan Hunter Shain
E-mail(s) hshain@gmail.com
Organization name University of California San Francisco
Department Pathology and Dermatology
Lab Boris Bastian
Street address 555 MISSION BAY SOUTH BLVD RM 282 # 3118
City San Francisco
State/province CA
ZIP/Postal code 94158-2156
Country USA
 
Platform ID GPL10123
Series (1)
GSE55150 Desmoplastic Melanoma

Data table header descriptions
ID_REF
VALUE normalized log10 ratio (Cy5/Cy3) representing test/reference

Data table
ID_REF VALUE
1 7.10E-02
2 0.00E+00
3 0.00E+00
4 0.00E+00
5 0.00E+00
6 0.00E+00
7 0.00E+00
8 0.00E+00
9 0.00E+00
10 0.00E+00
11 0.00E+00
12 0.00E+00
13 0.00E+00
14 0.00E+00
15 0.00E+00
16 0.00E+00
17 0.00E+00
18 0.00E+00
19 0.00E+00
20 0.00E+00

Total number of rows: 180880

Table truncated, full table size 2798 Kbytes.




Supplementary file Size Download File type/resource
GSM1333881_MSK_252206012871_S01_CGH_107_Sep09_1_3.txt.gz 58.6 Mb (ftp)(http) TXT
Processed data included within Sample table

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