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Sample GSM1332735 Query DataSets for GSM1332735
Status Public on Feb 22, 2014
Title appendiceal_orifice_patient10
Sample type RNA
 
Source name Appendiceal orifice
Organism Homo sapiens
Characteristics tissue: Intestinal mucosa
gender: Female
age: 57
Treatment protocol N/A
Growth protocol N/A
Extracted molecule total RNA
Extraction protocol Pinch biopsy that was snap frozen in Trizol for RNA extraction using chloroform purification and isopropanol extraction and purification using QIAgen Rneasy Mini Kit
Label Cy3
Label protocol Labeling was performed with Cy3 according to the manufacturer protoocl for one color microarray based gene expression analysis (Agilent)
 
Hybridization protocol Cy3 labeled, linearly amplified complementary RNA was synthesized and hybridized to Sureprint G3 Human Gene Expression 8 x 60K (Agilent) microarrays according to manufacturer's protocol.
Scan protocol Arrays were scanned using a High Resolution C scanner
Data processing Raw signal intensities were extracted with feature extraction v10.7 software with the protocol GE1_107_Sep09 and Grid 028004_D_F_20110819, to obtain spatially detrended signal intensities.
 
Submission date Feb 21, 2014
Last update date Feb 22, 2014
Contact name Mei San Tang
Organization name Washington University in St Louis
Department Pathology & Immunology
Street address 660 S Euclid, Campus Box 8118
City Saint Louis
State/province MO
ZIP/Postal code 63108
Country USA
 
Platform ID GPL13607
Series (1)
GSE55258 Th17, Th22 and Treg cells are enriched in the healthy human cecum

Data table header descriptions
ID_REF
VALUE Expression intensities were log2-transformed, quantile normalized and median-centered.

Data table
ID_REF VALUE
4 0.177575339
5 0.090169922
6 0.109605216
7 0.588846924
8 -0.241600851
9 -6.890442361
10 -0.057608463
11 -0.527913217
12 -0.149294436
13 -0.470606471
14 0.075713747
15 0.439625531
16 -0.080904943
17 0.057355251
18 -0.271068903
19 -0.248611148
20 0.132346656
21 -0.340799045
24 0.221198658
25 -0.203176147

Total number of rows: 58753

Table truncated, full table size 1043 Kbytes.




Supplementary file Size Download File type/resource
GSM1332735_80_1_2.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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