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Sample GSM1325183 Query DataSets for GSM1325183
Status Public on Aug 04, 2014
Title PrS_ESC1
Sample type RNA
Source name Primitive streak differentiated from human embryonic stem cells 1
Organism Homo sapiens
Characteristics cell type: Primitive streak differentiated from human embryonic stem cells 1
Extracted molecule total RNA
Extraction protocol Total RNA was isolated by Trizol reagent (Life Technologies) according to the manufacturer's instruction.
Label Cy3
Label protocol Agilent standard protocol
Hybridization protocol Agilent standard protocol
Scan protocol Agilent standard protocol
Description Primitive streak differentiated from human embryonic stem cells 1
Data processing The data were analyzed using the Gene Spring GX 11.5.1 software program (Agilent Technologies).The data processing was performed as follows; (i) Threshold raw signals were set to 1.0, (ii) Log base 2 transformation was performed, (iii) 75th percentile normalization was chosen as the normalized algorithm.
Submission date Feb 10, 2014
Last update date Aug 04, 2014
Contact name Kazutoshi Takahashi
Organization name Kyoto University
Department Center for iPS Cell Research and Application
Street address 53 Kawahara-cho, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8507
Country Japan
Platform ID GPL14550
Series (1)
GSE54848 Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency

Data table header descriptions
VALUE Normalized signal intensity

Data table
(+)E1A_r60_1 10.055711
(+)E1A_r60_3 -6.15304
(+)E1A_r60_a104 -5.9705567
(+)E1A_r60_a107 -2.6591759
(+)E1A_r60_a135 0.38623714
(+)E1A_r60_a20 1.7657728
(+)E1A_r60_a22 3.0629768
(+)E1A_r60_a97 5.3139267
(+)E1A_r60_n11 7.4968214
(+)E1A_r60_n9 8.400113
3xSLv1 -6.189579
A_19_P00315452 1.3335419
A_19_P00315459 -2.0975347
A_19_P00315469 -6.308284
A_19_P00315473 -5.9295673
A_19_P00315482 -5.861621
A_19_P00315490 -6.2455645
A_19_P00315492 -5.71843
A_19_P00315493 -1.5269346
A_19_P00315496 -6.3808193

Total number of rows: 42545

Table truncated, full table size 1001 Kbytes.

Supplementary file Size Download File type/resource
GSM1325183_PrS_ESC1.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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