GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1325169 Query DataSets for GSM1325169
Status Public on Aug 04, 2014
Title H9
Sample type RNA
Source name human embryonic stem cell line H9
Organism Homo sapiens
Characteristics cell type: human embryonic stem cell line H9
Extracted molecule total RNA
Extraction protocol Total RNA was isolated by Trizol reagent (Life Technologies) according to the manufacturer's instruction.
Label Cy3
Label protocol Agilent standard protocol
Hybridization protocol Agilent standard protocol
Scan protocol Agilent standard protocol
Description human embryonic stem cell line H9
Data processing The data were analyzed using the Gene Spring GX 11.5.1 software program (Agilent Technologies).The data processing was performed as follows; (i) Threshold raw signals were set to 1.0, (ii) Log base 2 transformation was performed, (iii) 75th percentile normalization was chosen as the normalized algorithm.
Submission date Feb 10, 2014
Last update date Aug 04, 2014
Contact name Kazutoshi Takahashi
Organization name Kyoto University
Department Center for iPS Cell Research and Application
Street address 53 Kawahara-cho, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8507
Country Japan
Platform ID GPL14550
Series (1)
GSE54848 Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency

Data table header descriptions
VALUE Normalized signal intensity

Data table
(+)E1A_r60_1 9.4442005
(+)E1A_r60_3 -7.3682485
(+)E1A_r60_a104 -7.0219793
(+)E1A_r60_a107 -2.5572042
(+)E1A_r60_a135 0.5246763
(+)E1A_r60_a20 1.742919
(+)E1A_r60_a22 3.4043589
(+)E1A_r60_a97 5.5661287
(+)E1A_r60_n11 7.5184326
(+)E1A_r60_n9 8.095125
3xSLv1 -7.4271116
A_19_P00315452 -1.4897232
A_19_P00315459 -1.7479801
A_19_P00315469 -7.538924
A_19_P00315473 -7.216734
A_19_P00315482 -4.6300774
A_19_P00315490 -7.300592
A_19_P00315492 -5.8835506
A_19_P00315493 -1.7685847
A_19_P00315496 -7.6501093

Total number of rows: 42545

Table truncated, full table size 1001 Kbytes.

Supplementary file Size Download File type/resource
GSM1325169_19-s6-H9_p47_13686_1_3.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap