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Sample GSM1325166 Query DataSets for GSM1325166
Status Public on Aug 04, 2014
Title OSKM_d49_2
Sample type RNA
Source name TRA-1-60 (+) cells on day 49
Organism Homo sapiens
Characteristics cell type: TRA-1-60 (+) cells on day 49
Extracted molecule total RNA
Extraction protocol Total RNA was isolated by Trizol reagent (Life Technologies) according to the manufacturer's instruction.
Label Cy3
Label protocol Agilent standard protocol
Hybridization protocol Agilent standard protocol
Scan protocol Agilent standard protocol
Description TRA-1-60 (+) cells on day 49
Data processing The data were analyzed using the Gene Spring GX 11.5.1 software program (Agilent Technologies).The data processing was performed as follows; (i) Threshold raw signals were set to 1.0, (ii) Log base 2 transformation was performed, (iii) 75th percentile normalization was chosen as the normalized algorithm.
Submission date Feb 10, 2014
Last update date Aug 04, 2014
Contact name Kazutoshi Takahashi
Organization name Kyoto University
Department Center for iPS Cell Research and Application
Street address 53 Kawahara-cho, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8507
Country Japan
Platform ID GPL14550
Series (1)
GSE54848 Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency

Data table header descriptions
VALUE Normalized signal intensity

Data table
(+)E1A_r60_1 9.977194
(+)E1A_r60_3 -6.8329735
(+)E1A_r60_a104 -6.5105457
(+)E1A_r60_a107 -2.7200975
(+)E1A_r60_a135 0.5878725
(+)E1A_r60_a20 1.8192635
(+)E1A_r60_a22 3.4344454
(+)E1A_r60_a97 5.800334
(+)E1A_r60_n11 7.642021
(+)E1A_r60_n9 8.414951
3xSLv1 -6.9183836
A_19_P00315452 0.8042908
A_19_P00315459 -1.9285765
A_19_P00315469 -3.477934
A_19_P00315473 -6.711157
A_19_P00315482 -4.965463
A_19_P00315490 -6.904167
A_19_P00315492 -5.935197
A_19_P00315493 -2.8364053
A_19_P00315496 -7.157263

Total number of rows: 42545

Table truncated, full table size 1001 Kbytes.

Supplementary file Size Download File type/resource
GSM1325166_OSKM_d49_2.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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