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Sample GSM1325158 Query DataSets for GSM1325158
Status Public on Aug 04, 2014
Title OSKM_d28_4
Sample type RNA
Source name TRA-1-60 (+) cells on day 28
Organism Homo sapiens
Characteristics cell type: TRA-1-60 (+) cells on day 28
Extracted molecule total RNA
Extraction protocol Total RNA was isolated by Trizol reagent (Life Technologies) according to the manufacturer's instruction.
Label Cy3
Label protocol Agilent standard protocol
Hybridization protocol Agilent standard protocol
Scan protocol Agilent standard protocol
Description TRA-1-60 (+) cells on day 28
Data processing The data were analyzed using the Gene Spring GX 11.5.1 software program (Agilent Technologies).The data processing was performed as follows; (i) Threshold raw signals were set to 1.0, (ii) Log base 2 transformation was performed, (iii) 75th percentile normalization was chosen as the normalized algorithm.
Submission date Feb 10, 2014
Last update date Aug 04, 2014
Contact name Kazutoshi Takahashi
Organization name Kyoto University
Department Center for iPS Cell Research and Application
Street address 53 Kawahara-cho, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8507
Country Japan
Platform ID GPL14550
Series (1)
GSE54848 Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency

Data table header descriptions
VALUE Normalized signal intensity

Data table
(+)E1A_r60_1 9.59711
(+)E1A_r60_3 -6.7177715
(+)E1A_r60_a104 -6.693315
(+)E1A_r60_a107 -3.2000751
(+)E1A_r60_a135 0.19501781
(+)E1A_r60_a20 1.3865681
(+)E1A_r60_a22 3.1401396
(+)E1A_r60_a97 5.2124586
(+)E1A_r60_n11 7.3133726
(+)E1A_r60_n9 8.141862
3xSLv1 -6.72346
A_19_P00315452 0.2805357
A_19_P00315459 -1.9704757
A_19_P00315469 -6.7923427
A_19_P00315473 -6.522709
A_19_P00315482 -5.3634005
A_19_P00315490 -6.689971
A_19_P00315492 -6.6862535
A_19_P00315493 -2.473703
A_19_P00315496 -6.956739

Total number of rows: 42545

Table truncated, full table size 1001 Kbytes.

Supplementary file Size Download File type/resource
GSM1325158_OSKM_d28_4.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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