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Sample GSM1325150 Query DataSets for GSM1325150
Status Public on Aug 04, 2014
Title OSKM_d15_3
Sample type RNA
Source name TRA-1-60 (+) cells on day 15
Organism Homo sapiens
Characteristics cell type: TRA-1-60 (+) cells on day 15
Extracted molecule total RNA
Extraction protocol Total RNA was isolated by Trizol reagent (Life Technologies) according to the manufacturer's instruction.
Label Cy3
Label protocol Agilent standard protocol
Hybridization protocol Agilent standard protocol
Scan protocol Agilent standard protocol
Description TRA-1-60 (+) cells on day 15
Data processing The data were analyzed using the Gene Spring GX 11.5.1 software program (Agilent Technologies).The data processing was performed as follows; (i) Threshold raw signals were set to 1.0, (ii) Log base 2 transformation was performed, (iii) 75th percentile normalization was chosen as the normalized algorithm.
Submission date Feb 10, 2014
Last update date Aug 04, 2014
Contact name Kazutoshi Takahashi
Organization name Kyoto University
Department Center for iPS Cell Research and Application
Street address 53 Kawahara-cho, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8507
Country Japan
Platform ID GPL14550
Series (1)
GSE54848 Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency

Data table header descriptions
VALUE Normalized signal intensity

Data table
(+)E1A_r60_1 9.957527
(+)E1A_r60_3 -4.856204
(+)E1A_r60_a104 -4.8503685
(+)E1A_r60_a107 -2.9432411
(+)E1A_r60_a135 0.2634325
(+)E1A_r60_a20 1.4152269
(+)E1A_r60_a22 2.9538326
(+)E1A_r60_a97 5.4185457
(+)E1A_r60_n11 7.4250307
(+)E1A_r60_n9 8.445915
3xSLv1 -4.851899
A_19_P00315452 0.95054626
A_19_P00315459 -1.8485055
A_19_P00315469 -4.1084723
A_19_P00315473 -4.6421266
A_19_P00315482 -4.6104803
A_19_P00315490 -4.8639054
A_19_P00315492 -5.0179815
A_19_P00315493 -4.213373
A_19_P00315496 -5.047414

Total number of rows: 42545

Table truncated, full table size 1001 Kbytes.

Supplementary file Size Download File type/resource
GSM1325150_OSKM_d15_3.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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