NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1325148 Query DataSets for GSM1325148
Status Public on Aug 04, 2014
Title OSKM_d15_1
Sample type RNA
 
Source name TRA-1-60 (+) cells on day 15
Organism Homo sapiens
Characteristics cell type: TRA-1-60 (+) cells on day 15
Extracted molecule total RNA
Extraction protocol Total RNA was isolated by Trizol reagent (Life Technologies) according to the manufacturer's instruction.
Label Cy3
Label protocol Agilent standard protocol
 
Hybridization protocol Agilent standard protocol
Scan protocol Agilent standard protocol
Description TRA-1-60 (+) cells on day 15
Data processing The data were analyzed using the Gene Spring GX 11.5.1 software program (Agilent Technologies).The data processing was performed as follows; (i) Threshold raw signals were set to 1.0, (ii) Log base 2 transformation was performed, (iii) 75th percentile normalization was chosen as the normalized algorithm.
 
Submission date Feb 10, 2014
Last update date Aug 04, 2014
Contact name Kazutoshi Takahashi
E-mail(s) kazu@cira.kyoto-u.ac.jp
Organization name Kyoto University
Department Center for iPS Cell Research and Application
Street address 53 Kawahara-cho, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8507
Country Japan
 
Platform ID GPL14550
Series (1)
GSE54848 Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency

Data table header descriptions
ID_REF
VALUE Normalized signal intensity

Data table
ID_REF VALUE
(+)E1A_r60_1 11.0271635
(+)E1A_r60_3 -5.110425
(+)E1A_r60_a104 -4.9033394
(+)E1A_r60_a107 -1.6070857
(+)E1A_r60_a135 1.5229197
(+)E1A_r60_a20 2.7771502
(+)E1A_r60_a22 4.224473
(+)E1A_r60_a97 6.5532665
(+)E1A_r60_n11 8.529648
(+)E1A_r60_n9 9.567946
3xSLv1 -5.116887
A_19_P00315452 0.5440278
A_19_P00315459 -1.3073273
A_19_P00315469 -4.5388765
A_19_P00315473 -4.9165363
A_19_P00315482 -3.1573987
A_19_P00315490 -5.1571097
A_19_P00315492 -4.8568635
A_19_P00315493 -3.8954442
A_19_P00315496 -5.3268194

Total number of rows: 42545

Table truncated, full table size 1002 Kbytes.




Supplementary file Size Download File type/resource
GSM1325148_OSKM_d15_1.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap