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Sample GSM1325146 Query DataSets for GSM1325146
Status Public on Aug 04, 2014
Title OSKM_d11_2
Sample type RNA
Source name TRA-1-60 (+) cells on day 11
Organism Homo sapiens
Characteristics cell type: TRA-1-60 (+) cells on day 11
Extracted molecule total RNA
Extraction protocol Total RNA was isolated by Trizol reagent (Life Technologies) according to the manufacturer's instruction.
Label Cy3
Label protocol Agilent standard protocol
Hybridization protocol Agilent standard protocol
Scan protocol Agilent standard protocol
Description TRA-1-60 (+) cells on day 11
Data processing The data were analyzed using the Gene Spring GX 11.5.1 software program (Agilent Technologies).The data processing was performed as follows; (i) Threshold raw signals were set to 1.0, (ii) Log base 2 transformation was performed, (iii) 75th percentile normalization was chosen as the normalized algorithm.
Submission date Feb 10, 2014
Last update date Aug 04, 2014
Contact name Kazutoshi Takahashi
Organization name Kyoto University
Department Center for iPS Cell Research and Application
Street address 53 Kawahara-cho, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8507
Country Japan
Platform ID GPL14550
Series (1)
GSE54848 Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency

Data table header descriptions
VALUE Normalized signal intensity

Data table
(+)E1A_r60_1 10.238466
(+)E1A_r60_3 -5.8913326
(+)E1A_r60_a104 -5.871409
(+)E1A_r60_a107 -2.5503325
(+)E1A_r60_a135 0.6133623
(+)E1A_r60_a20 1.8470764
(+)E1A_r60_a22 3.4544735
(+)E1A_r60_a97 5.627097
(+)E1A_r60_n11 7.6654673
(+)E1A_r60_n9 8.697588
3xSLv1 -5.950624
A_19_P00315452 0.68938255
A_19_P00315459 -1.6506419
A_19_P00315469 -5.919298
A_19_P00315473 -5.7546835
A_19_P00315482 -3.6305113
A_19_P00315490 -5.9327855
A_19_P00315492 -6.0998516
A_19_P00315493 -2.8503509
A_19_P00315496 -5.2777653

Total number of rows: 42545

Table truncated, full table size 1001 Kbytes.

Supplementary file Size Download File type/resource
GSM1325146_OSKM_d11_2.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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