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Sample GSM1325145 Query DataSets for GSM1325145
Status Public on Aug 04, 2014
Title OSKM_d11_1
Sample type RNA
Source name TRA-1-60 (+) cells on day 11
Organism Homo sapiens
Characteristics cell type: TRA-1-60 (+) cells on day 11
Extracted molecule total RNA
Extraction protocol Total RNA was isolated by Trizol reagent (Life Technologies) according to the manufacturer's instruction.
Label Cy3
Label protocol Agilent standard protocol
Hybridization protocol Agilent standard protocol
Scan protocol Agilent standard protocol
Description TRA-1-60 (+) cells on day 11
Data processing The data were analyzed using the Gene Spring GX 11.5.1 software program (Agilent Technologies).The data processing was performed as follows; (i) Threshold raw signals were set to 1.0, (ii) Log base 2 transformation was performed, (iii) 75th percentile normalization was chosen as the normalized algorithm.
Submission date Feb 10, 2014
Last update date Aug 04, 2014
Contact name Kazutoshi Takahashi
Organization name Kyoto University
Department Center for iPS Cell Research and Application
Street address 53 Kawahara-cho, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8507
Country Japan
Platform ID GPL14550
Series (1)
GSE54848 Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency

Data table header descriptions
VALUE Normalized signal intensity

Data table
(+)E1A_r60_1 10.2485075
(+)E1A_r60_3 -5.701535
(+)E1A_r60_a104 -5.7283545
(+)E1A_r60_a107 -2.4266515
(+)E1A_r60_a135 0.73073196
(+)E1A_r60_a20 1.9375601
(+)E1A_r60_a22 3.5122948
(+)E1A_r60_a97 5.743203
(+)E1A_r60_n11 7.7510443
(+)E1A_r60_n9 8.753816
3xSLv1 -5.814255
A_19_P00315452 1.1768837
A_19_P00315459 -1.3129969
A_19_P00315469 -5.9302473
A_19_P00315473 -5.5981684
A_19_P00315482 -4.382867
A_19_P00315490 -5.856222
A_19_P00315492 -5.3532524
A_19_P00315493 -4.4960623
A_19_P00315496 -6.0051355

Total number of rows: 42545

Table truncated, full table size 1001 Kbytes.

Supplementary file Size Download File type/resource
GSM1325145_OSKM_d11_1.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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