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Sample GSM1325139 Query DataSets for GSM1325139
Status Public on Aug 04, 2014
Title OSKM_d3_1
Sample type RNA
Source name human dermal fibroblast transduced OSKM on day 3
Organism Homo sapiens
Characteristics cell type: human dermal fibroblast transduced OSKM on day 3
Extracted molecule total RNA
Extraction protocol Total RNA was isolated by Trizol reagent (Life Technologies) according to the manufacturer's instruction.
Label Cy3
Label protocol Agilent standard protocol
Hybridization protocol Agilent standard protocol
Scan protocol Agilent standard protocol
Description human dermal fibroblast transduced OSKM on day 3
Data processing The data were analyzed using the Gene Spring GX 11.5.1 software program (Agilent Technologies).The data processing was performed as follows; (i) Threshold raw signals were set to 1.0, (ii) Log base 2 transformation was performed, (iii) 75th percentile normalization was chosen as the normalized algorithm.
Submission date Feb 10, 2014
Last update date Aug 04, 2014
Contact name Kazutoshi Takahashi
Organization name Kyoto University
Department Center for iPS Cell Research and Application
Street address 53 Kawahara-cho, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8507
Country Japan
Platform ID GPL14550
Series (1)
GSE54848 Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency

Data table header descriptions
VALUE Normalized signal intensity

Data table
(+)E1A_r60_1 9.951232
(+)E1A_r60_3 -6.5565805
(+)E1A_r60_a104 -6.3827124
(+)E1A_r60_a107 -3.1299243
(+)E1A_r60_a135 0.3183775
(+)E1A_r60_a20 1.716754
(+)E1A_r60_a22 3.2458878
(+)E1A_r60_a97 5.269352
(+)E1A_r60_n11 7.525111
(+)E1A_r60_n9 8.426841
3xSLv1 -6.5609546
A_19_P00315452 1.5821619
A_19_P00315459 -1.7224474
A_19_P00315469 -6.567294
A_19_P00315473 -6.369876
A_19_P00315482 -4.8968945
A_19_P00315490 -6.587499
A_19_P00315492 -5.6992474
A_19_P00315493 -3.1581001
A_19_P00315496 -6.7930555

Total number of rows: 42545

Table truncated, full table size 1000 Kbytes.

Supplementary file Size Download File type/resource
GSM1325139_OSKM_d3_1.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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