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Sample GSM1325131 Query DataSets for GSM1325131
Status Public on Aug 04, 2014
Title TKCBV5-6s12
Sample type RNA
Source name human induced pluripotent stem cell line TKCBV5-6 subclone
Organism Homo sapiens
Characteristics cell type: human induced pluripotent stem cell line TKCBV5-6 subclone
Extracted molecule total RNA
Extraction protocol Total RNA was isolated by Trizol reagent (Life Technologies) according to the manufacturer's instruction.
Label Cy3
Label protocol Agilent standard protocol
Hybridization protocol Agilent standard protocol
Scan protocol Agilent standard protocol
Description human induced pluripotent stem cell line TKCBV5-6 subclone
Data processing The data were analyzed using the Gene Spring GX 11.5.1 software program (Agilent Technologies).The data processing was performed as follows; (i) Threshold raw signals were set to 1.0, (ii) Log base 2 transformation was performed, (iii) 75th percentile normalization was chosen as the normalized algorithm.
Submission date Feb 10, 2014
Last update date Aug 04, 2014
Contact name Kazutoshi Takahashi
Organization name Kyoto University
Department Center for iPS Cell Research and Application
Street address 53 Kawahara-cho, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8507
Country Japan
Platform ID GPL14550
Series (1)
GSE54848 Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency

Data table header descriptions
VALUE Normalized signal intensity

Data table
(+)E1A_r60_1 9.611045
(+)E1A_r60_3 -7.2401185
(+)E1A_r60_a104 -6.2121086
(+)E1A_r60_a107 -2.8015656
(+)E1A_r60_a135 0.4769411
(+)E1A_r60_a20 1.5961733
(+)E1A_r60_a22 3.4816608
(+)E1A_r60_a97 5.487523
(+)E1A_r60_n11 7.412362
(+)E1A_r60_n9 8.290217
3xSLv1 -7.23108
A_19_P00315452 -1.234468
A_19_P00315459 -2.298603
A_19_P00315469 -7.3079963
A_19_P00315473 -7.058467
A_19_P00315482 -5.094141
A_19_P00315490 -7.2104855
A_19_P00315492 -5.9649224
A_19_P00315493 -2.1662025
A_19_P00315496 -7.47838

Total number of rows: 42545

Table truncated, full table size 1001 Kbytes.

Supplementary file Size Download File type/resource
GSM1325131_12_TKCBV5-6_sub12.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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