GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1325129 Query DataSets for GSM1325129
Status Public on Aug 04, 2014
Title TKCBV5-6s10
Sample type RNA
Source name human induced pluripotent stem cell line TKCBV5-6 subclone
Organism Homo sapiens
Characteristics cell type: human induced pluripotent stem cell line TKCBV5-6 subclone
Extracted molecule total RNA
Extraction protocol Total RNA was isolated by Trizol reagent (Life Technologies) according to the manufacturer's instruction.
Label Cy3
Label protocol Agilent standard protocol
Hybridization protocol Agilent standard protocol
Scan protocol Agilent standard protocol
Description human induced pluripotent stem cell line TKCBV5-6 subclone
Data processing The data were analyzed using the Gene Spring GX 11.5.1 software program (Agilent Technologies).The data processing was performed as follows; (i) Threshold raw signals were set to 1.0, (ii) Log base 2 transformation was performed, (iii) 75th percentile normalization was chosen as the normalized algorithm.
Submission date Feb 10, 2014
Last update date Aug 04, 2014
Contact name Kazutoshi Takahashi
Organization name Kyoto University
Department Center for iPS Cell Research and Application
Street address 53 Kawahara-cho, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8507
Country Japan
Platform ID GPL14550
Series (1)
GSE54848 Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency

Data table header descriptions
VALUE Normalized signal intensity

Data table
(+)E1A_r60_1 9.556757
(+)E1A_r60_3 -7.3645406
(+)E1A_r60_a104 -6.409993
(+)E1A_r60_a107 -2.9094005
(+)E1A_r60_a135 0.3175106
(+)E1A_r60_a20 1.4317541
(+)E1A_r60_a22 3.2908735
(+)E1A_r60_a97 5.3250494
(+)E1A_r60_n11 7.2671413
(+)E1A_r60_n9 8.225813
3xSLv1 -7.5502415
A_19_P00315452 -1.290678
A_19_P00315459 -2.0758266
A_19_P00315469 -7.6346097
A_19_P00315473 -7.342139
A_19_P00315482 -5.306485
A_19_P00315490 -7.5420074
A_19_P00315492 -5.237772
A_19_P00315493 -2.2979965
A_19_P00315496 -7.7750497

Total number of rows: 42545

Table truncated, full table size 1000 Kbytes.

Supplementary file Size Download File type/resource
GSM1325129_10_TKCBV5-6_sub10.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap