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Sample GSM1325123 Query DataSets for GSM1325123
Status Public on Aug 04, 2014
Title TKCBV5-6s4
Sample type RNA
 
Source name human induced pluripotent stem cell line TKCBV5-6 subclone
Organism Homo sapiens
Characteristics cell type: human induced pluripotent stem cell line TKCBV5-6 subclone
Extracted molecule total RNA
Extraction protocol Total RNA was isolated by Trizol reagent (Life Technologies) according to the manufacturer's instruction.
Label Cy3
Label protocol Agilent standard protocol
 
Hybridization protocol Agilent standard protocol
Scan protocol Agilent standard protocol
Description human induced pluripotent stem cell line TKCBV5-6 subclone
Data processing The data were analyzed using the Gene Spring GX 11.5.1 software program (Agilent Technologies).The data processing was performed as follows; (i) Threshold raw signals were set to 1.0, (ii) Log base 2 transformation was performed, (iii) 75th percentile normalization was chosen as the normalized algorithm.
 
Submission date Feb 10, 2014
Last update date Aug 04, 2014
Contact name Kazutoshi Takahashi
E-mail(s) kazu@cira.kyoto-u.ac.jp
Organization name Kyoto University
Department Center for iPS Cell Research and Application
Street address 53 Kawahara-cho, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8507
Country Japan
 
Platform ID GPL14550
Series (1)
GSE54848 Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency

Data table header descriptions
ID_REF
VALUE Normalized signal intensity

Data table
ID_REF VALUE
(+)E1A_r60_1 9.693666
(+)E1A_r60_3 -7.300151
(+)E1A_r60_a104 -6.0777483
(+)E1A_r60_a107 -2.5501485
(+)E1A_r60_a135 0.6716862
(+)E1A_r60_a20 1.7232981
(+)E1A_r60_a22 3.5872622
(+)E1A_r60_a97 5.60742
(+)E1A_r60_n11 7.570318
(+)E1A_r60_n9 8.41157
3xSLv1 -7.4579244
A_19_P00315452 -0.861516
A_19_P00315459 -1.7682033
A_19_P00315469 -7.5410213
A_19_P00315473 -7.2955523
A_19_P00315482 -5.3266807
A_19_P00315490 -7.4449835
A_19_P00315492 -6.0338917
A_19_P00315493 -2.1602178
A_19_P00315496 -7.3806114

Total number of rows: 42545

Table truncated, full table size 1000 Kbytes.




Supplementary file Size Download File type/resource
GSM1325123_04_TKCBV5-6_sub4.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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