GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1325108 Query DataSets for GSM1325108
Status Public on Aug 04, 2014
Title TIG108-4F3s41
Sample type RNA
Source name human induced pluripotent stem cell line TIG108-4F3 subclone
Organism Homo sapiens
Characteristics cell type: human induced pluripotent stem cell line TIG108-4F3 subclone
Extracted molecule total RNA
Extraction protocol Total RNA was isolated by Trizol reagent (Life Technologies) according to the manufacturer's instruction.
Label Cy3
Label protocol Agilent standard protocol
Hybridization protocol Agilent standard protocol
Scan protocol Agilent standard protocol
Description human induced pluripotent stem cell line TIG108-4F3 subclone
Data processing The data were analyzed using the Gene Spring GX 11.5.1 software program (Agilent Technologies).The data processing was performed as follows; (i) Threshold raw signals were set to 1.0, (ii) Log base 2 transformation was performed, (iii) 75th percentile normalization was chosen as the normalized algorithm.
Submission date Feb 10, 2014
Last update date Aug 04, 2014
Contact name Kazutoshi Takahashi
Organization name Kyoto University
Department Center for iPS Cell Research and Application
Street address 53 Kawahara-cho, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8507
Country Japan
Platform ID GPL14550
Series (1)
GSE54848 Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency

Data table header descriptions
VALUE Normalized signal intensity

Data table
(+)E1A_r60_1 9.83983
(+)E1A_r60_3 -7.161754
(+)E1A_r60_a104 -6.3219433
(+)E1A_r60_a107 -2.9698215
(+)E1A_r60_a135 0.35495758
(+)E1A_r60_a20 1.6349087
(+)E1A_r60_a22 3.2562618
(+)E1A_r60_a97 5.3134384
(+)E1A_r60_n11 7.3370686
(+)E1A_r60_n9 8.20636
3xSLv1 -7.3241005
A_19_P00315452 -0.6679516
A_19_P00315459 -1.6704025
A_19_P00315469 -6.6920156
A_19_P00315473 -7.0613956
A_19_P00315482 -4.8746405
A_19_P00315490 -7.3266134
A_19_P00315492 -5.4504223
A_19_P00315493 -2.4295845
A_19_P00315496 -6.6400194

Total number of rows: 42545

Table truncated, full table size 1001 Kbytes.

Supplementary file Size Download File type/resource
GSM1325108_11_TIG108-4F3_s24.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap