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Sample GSM1325095 Query DataSets for GSM1325095
Status Public on Aug 04, 2014
Title TIG108-4f3s1
Sample type RNA
Source name human induced pluripotent stem cell line TIG108-4F3 subclone
Organism Homo sapiens
Characteristics cell type: human induced pluripotent stem cell line TIG108-4F3 subclone
Extracted molecule total RNA
Extraction protocol Total RNA was isolated by Trizol reagent (Life Technologies) according to the manufacturer's instruction.
Label Cy3
Label protocol Agilent standard protocol
Hybridization protocol Agilent standard protocol
Scan protocol Agilent standard protocol
Description human induced pluripotent stem cell line TIG108-4F3 subclone
Data processing The data were analyzed using the Gene Spring GX 11.5.1 software program (Agilent Technologies).The data processing was performed as follows; (i) Threshold raw signals were set to 1.0, (ii) Log base 2 transformation was performed, (iii) 75th percentile normalization was chosen as the normalized algorithm.
Submission date Feb 10, 2014
Last update date Aug 04, 2014
Contact name Kazutoshi Takahashi
Organization name Kyoto University
Department Center for iPS Cell Research and Application
Street address 53 Kawahara-cho, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8507
Country Japan
Platform ID GPL14550
Series (1)
GSE54848 Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency

Data table header descriptions
VALUE Normalized signal intensity

Data table
(+)E1A_r60_1 10.595236
(+)E1A_r60_3 -6.3755646
(+)E1A_r60_a104 -4.411256
(+)E1A_r60_a107 -0.56251144
(+)E1A_r60_a135 2.79916
(+)E1A_r60_a20 4.0549107
(+)E1A_r60_a22 5.671235
(+)E1A_r60_a97 7.6911583
(+)E1A_r60_n11 9.637571
(+)E1A_r60_n9 9.933151
3xSLv1 -6.693189
A_19_P00315452 -0.55873585
A_19_P00315459 -1.5315547
A_19_P00315469 -6.576455
A_19_P00315473 -5.0078173
A_19_P00315482 -5.29821
A_19_P00315490 -6.7294493
A_19_P00315492 -5.731326
A_19_P00315493 -3.0692582
A_19_P00315496 -6.896227

Total number of rows: 42545

Table truncated, full table size 1001 Kbytes.

Supplementary file Size Download File type/resource
GSM1325095_TIG108-4f3_s2-1.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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