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Sample GSM1325085 Query DataSets for GSM1325085
Status Public on Aug 04, 2014
Title 451F3s6
Sample type RNA
Source name human induced pluripotent stem cell line 451F3 subclone
Organism Homo sapiens
Characteristics cell type: human induced pluripotent stem cell line 451F3 subclone
Extracted molecule total RNA
Extraction protocol Total RNA was isolated by Trizol reagent (Life Technologies) according to the manufacturer's instruction.
Label Cy3
Label protocol Agilent standard protocol
Hybridization protocol Agilent standard protocol
Scan protocol Agilent standard protocol
Description human induced pluripotent stem cell line 451F3 subclone
Data processing The data were analyzed using the Gene Spring GX 11.5.1 software program (Agilent Technologies).The data processing was performed as follows; (i) Threshold raw signals were set to 1.0, (ii) Log base 2 transformation was performed, (iii) 75th percentile normalization was chosen as the normalized algorithm.
Submission date Feb 10, 2014
Last update date Aug 04, 2014
Contact name Kazutoshi Takahashi
Organization name Kyoto University
Department Center for iPS Cell Research and Application
Street address 53 Kawahara-cho, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8507
Country Japan
Platform ID GPL14550
Series (1)
GSE54848 Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency

Data table header descriptions
VALUE Normalized signal intensity

Data table
(+)E1A_r60_1 9.756733
(+)E1A_r60_3 -7.240683
(+)E1A_r60_a104 -5.900894
(+)E1A_r60_a107 -2.7999763
(+)E1A_r60_a135 0.66692543
(+)E1A_r60_a20 1.7308941
(+)E1A_r60_a22 3.5365524
(+)E1A_r60_a97 5.5997276
(+)E1A_r60_n11 7.47847
(+)E1A_r60_n9 8.380127
3xSLv1 -7.554277
A_19_P00315452 0.86169434
A_19_P00315459 -1.759686
A_19_P00315469 -7.6475263
A_19_P00315473 -7.3822393
A_19_P00315482 -4.7867284
A_19_P00315490 -7.551404
A_19_P00315492 -5.1412344
A_19_P00315493 -1.6414399
A_19_P00315496 -7.7617455

Total number of rows: 42545

Table truncated, full table size 1001 Kbytes.

Supplementary file Size Download File type/resource
GSM1325085_06_451F3sub6.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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