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Sample GSM1325084 Query DataSets for GSM1325084
Status Public on Aug 04, 2014
Title 451F3s5
Sample type RNA
Source name human induced pluripotent stem cell line 451F3 subclone
Organism Homo sapiens
Characteristics cell type: human induced pluripotent stem cell line 451F3 subclone
Extracted molecule total RNA
Extraction protocol Total RNA was isolated by Trizol reagent (Life Technologies) according to the manufacturer's instruction.
Label Cy3
Label protocol Agilent standard protocol
Hybridization protocol Agilent standard protocol
Scan protocol Agilent standard protocol
Description human induced pluripotent stem cell line 451F3 subclone
Data processing The data were analyzed using the Gene Spring GX 11.5.1 software program (Agilent Technologies).The data processing was performed as follows; (i) Threshold raw signals were set to 1.0, (ii) Log base 2 transformation was performed, (iii) 75th percentile normalization was chosen as the normalized algorithm.
Submission date Feb 10, 2014
Last update date Aug 04, 2014
Contact name Kazutoshi Takahashi
Organization name Kyoto University
Department Center for iPS Cell Research and Application
Street address 53 Kawahara-cho, Shogoin, Sakyo-ku
City Kyoto
ZIP/Postal code 606-8507
Country Japan
Platform ID GPL14550
Series (1)
GSE54848 Critical role of transient activation of human endogenous retroviruses during reprogramming toward pluripotency

Data table header descriptions
VALUE Normalized signal intensity

Data table
(+)E1A_r60_1 9.481182
(+)E1A_r60_3 -7.538462
(+)E1A_r60_a104 -6.136488
(+)E1A_r60_a107 -3.000885
(+)E1A_r60_a135 0.35190582
(+)E1A_r60_a20 1.4448481
(+)E1A_r60_a22 3.2738066
(+)E1A_r60_a97 5.3136625
(+)E1A_r60_n11 7.21245
(+)E1A_r60_n9 8.10466
3xSLv1 -7.87728
A_19_P00315452 -0.008924484
A_19_P00315459 -2.1220202
A_19_P00315469 -7.967537
A_19_P00315473 -7.7332487
A_19_P00315482 -4.679638
A_19_P00315490 -7.8621607
A_19_P00315492 -5.2292023
A_19_P00315493 -1.6969047
A_19_P00315496 -8.0576725

Total number of rows: 42545

Table truncated, full table size 1000 Kbytes.

Supplementary file Size Download File type/resource
GSM1325084_05_451F3sub5.txt.gz 3.1 Mb (ftp)(http) TXT
Processed data included within Sample table

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