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Sample GSM1324035 Query DataSets for GSM1324035
Status Public on Mar 06, 2014
Title 654LN AML
Sample type RNA
Source name Mouse Lymph Node
Organism Mus musculus
Characteristics tissue: Lymph Node
disease: AML
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Genomic DNA was extracted using standard techniques
Label Cy3
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
DNA was bisulfite converted, amplified, and labeled
Hybridization protocol Standard Illumina hybridization protocol
DNA was hybridized to the Illumina GoldenGate Cancer Panel I array using the standard Illumina protocol
Scan protocol Standard Illumina scanning protocol
Arrays were imaged using BeadArray Reader using the standard Illumina scanner setting
Description AML
Data processing Intensity was generated by the Illumina BeadStudio software and processed by the R/Bioconductor packages
Cy3, Cy5, Average Beta, and detection p-values were extracted using BeadStudio software
Submission date Feb 07, 2014
Last update date Mar 06, 2014
Contact name Yuelin Jack Zhu
Phone (240)760-7439
Organization name NCI
Department Genetics Branch, Center for Cancer Research
Lab Dr. Paul Meltzer's Lab
Street address 9000 Rockville Pike
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL6885
Series (2)
GSE54787 Gene expression study of leukemic and premalignant hematopoietic tissues from NUP98-PHF23 (NP23) mice.
GSE54788 NUP98-PHF23

Data table header descriptions
VALUE Average Beta

Data table
ILMN_2896528 11.526
ILMN_2721178 9.514
ILMN_3033922 10.154
ILMN_3092673 12.577
ILMN_2816356 7.622
ILMN_2808939 9.767
ILMN_2634564 8.688
ILMN_2737647 7.479
ILMN_2734484 10.181
ILMN_2952292 8.143
ILMN_2699078 7.353
ILMN_1213681 8.355
ILMN_2735413 7.348
ILMN_2735415 7.462
ILMN_2891688 10.198
ILMN_2637698 10.395
ILMN_2674228 9.107
ILMN_2601546 7.56
ILMN_1230831 7.44
ILMN_2848071 7.596

Total number of rows: 25697

Table truncated, full table size 477 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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