|
| Status |
Public on Feb 07, 2014 |
| Title |
VAT_MetS+_5958091030_R06C02 |
| Sample type |
genomic |
| |
|
| Source name |
VAT_MetS+
|
| Organism |
Homo sapiens |
| Characteristics |
disease state: MetS+
gender: Male
tissue: Visceral adipose tissue
|
| Treatment protocol |
Obese men with and without the metabolic syndrome
|
| Growth protocol |
Visceral adipose tissue was obtained during biliopancreatic diversion surgery
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted from the VAT using the DNeasy Blood & Tissue kit, as recommended by the manufacturer
|
| Label |
biotin
|
| Label protocol |
Standard illumina protocol
|
| |
|
| Hybridization protocol |
Standard illumina protocol
|
| Scan protocol |
Standard illumina protocol
|
| Description |
5958091030_R06C02
|
| Data processing |
The GenomeStudio® software version 2011.1 (Illumina Inc.) and the Methylation Module were used. Beta values were estimated and data correction (background subtraction and normalization) was applied using internal control probe pairs. CpG sites with a detection p-value > 0.05 were removed from analysis.
|
| |
|
| Submission date |
Feb 07, 2014 |
| Last update date |
Feb 07, 2014 |
| Contact name |
Frederic Guenard |
| Organization name |
Laval University
|
| Street address |
2440, Hochelage blvd
|
| City |
Quebec |
| ZIP/Postal code |
G1V 0A6 |
| Country |
Canada |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE54776 |
Gene methylation profiles in visceral adipose tissue of obese men with and without the metabolic syndrome |
|
