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Sample GSM1323793 Query DataSets for GSM1323793
Status Public on Feb 07, 2014
Title VAT_MetS-_5958031032_R01C01
Sample type genomic
Source name VAT_MetS-
Organism Homo sapiens
Characteristics disease state: MetS-
gender: Male
tissue: Visceral adipose tissue
Treatment protocol Obese men with and without the metabolic syndrome
Growth protocol Visceral adipose tissue was obtained during biliopancreatic diversion surgery
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted from the VAT using the DNeasy Blood & Tissue kit, as recommended by the manufacturer
Label biotin
Label protocol Standard illumina protocol
Hybridization protocol Standard illumina protocol
Scan protocol Standard illumina protocol
Description 5958031032_R01C01
Data processing The GenomeStudio® software version 2011.1 (Illumina Inc.) and the Methylation Module were used. Beta values were estimated and data correction (background subtraction and normalization) was applied using internal control probe pairs. CpG sites with a detection p-value > 0.05 were removed from analysis.
Submission date Feb 07, 2014
Last update date Feb 07, 2014
Contact name Frederic Guenard
Organization name Laval University
Street address 2440, Hochelage blvd
City Quebec
ZIP/Postal code G1V 0A6
Country Canada
Platform ID GPL13534
Series (1)
GSE54776 Gene methylation profiles in visceral adipose tissue of obese men with and without the metabolic syndrome

Data table header descriptions
VALUE Normalized average beta. Data correction (background subtraction and normalization) was applied using internal control probe pairs.
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.2955365 0
cg00000108 0.957302 0
cg00000109 0.8385933 0
cg00000165 0.1593359 0
cg00000236 0.7726738 0
cg00000289 0.6915238 0
cg00000292 0.67111 0
cg00000321 0.3534408 0
cg00000363 0.2335358 0
cg00000622 0.004916219 0
cg00000658 0.8440322 0
cg00000714 0.123006 0
cg00000721 0.9393118 0
cg00000734 0.06756888 0
cg00000769 0.02867238 0
cg00000807 0.8002065 0
cg00000884 0.8655574 0
cg00000905 0.06377403 0
cg00000924 0.4052255 0
cg00000948 0.9360105 0

Total number of rows: 485577

Table truncated, full table size 10982 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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