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Sample GSM1320796 Query DataSets for GSM1320796
Status Public on Feb 04, 2014
Title genomic DNA from Citrate, o/n at room temp Human whole blood (3082CitRt)
Sample type genomic
Source name Citrate, o/n at room temp Human whole blood 3082CitRt
Organism Homo sapiens
Characteristics sample type: Human whole blood
disease state: normal
sample subtype: Citrate, o/n at room temp
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 3082CitRt
Citrate, o/n at room temp Human whole blood 3082CitRt
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.9358902
foxp3DMR1in 0.9712324
foxp3DMRpro 0.9243727
cg00071250 0.5916207
cg00226923 0.967182
cg00431549 0.04305928
cg00491404 0.7904276
cg00546897 0.7064445
cg00554250 0.1038882
cg00620024 0.6889882
cg00673191 0.4200685
cg00739120 0.2395157
cg00795812 0.9312075
cg00899659 0.3768417
cg01031251 0.9001061
cg01124420 0.5466471
cg01182697 0.2341714
cg01278291 0.461361
cg01344171 0.6243615
cg01441777 0.4489773

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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