GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1320795 Query DataSets for GSM1320795
Status Public on Feb 04, 2014
Title genomic DNA from CD16+ NK cells Purified WBC subtype (NK16p2589)
Sample type genomic
Source name CD16+ NK cells Purified WBC subtype NK16p2589
Organism Homo sapiens
Characteristics sample type: Purified WBC subtype
disease state: normal
sample subtype: CD16+ NK cells
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description NK16p2589
CD16+ NK cells Purified WBC subtype NK16p2589
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.1054949
foxp3DMR1in 0.9663616
foxp3DMRpro 0.8441573
cg00071250 0.0335343
cg00226923 0.9675636
cg00431549 0.02303704
cg00491404 0.2462949
cg00546897 0.9288027
cg00554250 0.1518523
cg00620024 0.8455415
cg00673191 0.7833691
cg00739120 0.1911742
cg00795812 0.872264
cg00899659 0.4784575
cg01031251 0.9661347
cg01124420 0.585166
cg01182697 0.1633582
cg01278291 0.6661687
cg01344171 0.3572095
cg01441777 0.5681753

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap