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Sample GSM1320793 Query DataSets for GSM1320793
Status Public on Feb 04, 2014
Title genomic DNA from EDTA, o/n at room temp Human whole blood (3021EDTARt)
Sample type genomic
Source name EDTA, o/n at room temp Human whole blood 3021EDTARt
Organism Homo sapiens
Characteristics sample type: Human whole blood
disease state: normal
sample subtype: EDTA, o/n at room temp
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 3021EDTARt
EDTA, o/n at room temp Human whole blood 3021EDTARt
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.8647746
foxp3DMR1in 0.9400364
foxp3DMRpro 0.8765657
cg00071250 0.4046768
cg00226923 0.9451086
cg00431549 0.04257694
cg00491404 0.5762808
cg00546897 0.7930278
cg00554250 0.1882084
cg00620024 0.6391908
cg00673191 0.5405179
cg00739120 0.4134134
cg00795812 0.8335829
cg00899659 0.5043633
cg01031251 0.8991641
cg01124420 0.4385073
cg01182697 0.3615519
cg01278291 0.5809753
cg01344171 0.542538
cg01441777 0.5621815

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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