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Sample GSM1320792 Query DataSets for GSM1320792
Status Public on Feb 04, 2014
Title genomic DNA from Citrate, o/n at 4C Human whole blood (3177Cit4C)
Sample type genomic
Source name Citrate, o/n at 4C Human whole blood 3177Cit4C
Organism Homo sapiens
Characteristics sample type: Human whole blood
disease state: normal
sample subtype: Citrate, o/n at 4C
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 3177Cit4C
Citrate, o/n at 4C Human whole blood 3177Cit4C
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.865304
foxp3DMR1in 0.9646223
foxp3DMRpro 0.8954502
cg00071250 0.3683907
cg00226923 0.9490117
cg00431549 0.05643434
cg00491404 0.7238694
cg00546897 0.8435838
cg00554250 0.1484404
cg00620024 0.489448
cg00673191 0.4898733
cg00739120 0.3733266
cg00795812 0.8206105
cg00899659 0.4192615
cg01031251 0.9153247
cg01124420 0.4585722
cg01182697 0.3080634
cg01278291 0.4227455
cg01344171 0.676875
cg01441777 0.6498356

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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