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Sample GSM1320791 Query DataSets for GSM1320791
Status Public on Feb 04, 2014
Title genomic DNA from Granuloctyes Purified WBC subtype (Gran2271)
Sample type genomic
Source name Granuloctyes Purified WBC subtype Gran2271
Organism Homo sapiens
Characteristics sample type: Purified WBC subtype
disease state: normal
sample subtype: Granuloctyes
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description Gran2271
Granuloctyes Purified WBC subtype Gran2271
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.966301
foxp3DMR1in 0.9388733
foxp3DMRpro 0.9112415
cg00071250 0.8409235
cg00226923 0.9382821
cg00431549 0.02611514
cg00491404 0.7776604
cg00546897 0.3983203
cg00554250 0.07912249
cg00620024 0.7554158
cg00673191 0.2585576
cg00739120 0.1678988
cg00795812 0.9628754
cg00899659 0.04523576
cg01031251 0.8114895
cg01124420 0.5932363
cg01182697 0.06444676
cg01278291 0.128598
cg01344171 0.384077
cg01441777 0.2798283

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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