NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1320790 Query DataSets for GSM1320790
Status Public on Feb 04, 2014
Title genomic DNA from Heparin, Fresh Human whole blood (3082HepFr)
Sample type genomic
 
Source name Heparin, Fresh Human whole blood 3082HepFr
Organism Homo sapiens
Characteristics sample type: Human whole blood
disease state: normal
sample subtype: Heparin, Fresh
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 3082HepFr
Heparin, Fresh Human whole blood 3082HepFr
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
 
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
ID_REF
VALUE Average Beta (0-1 constrained), not normalized

Data table
ID_REF VALUE
cd3zDMR 0.9227139
foxp3DMR1in 0.9647936
foxp3DMRpro 0.8940513
cg00071250 0.6021512
cg00226923 0.9670408
cg00431549 0.04013792
cg00491404 0.7971341
cg00546897 0.7204662
cg00554250 0.121179
cg00620024 0.6188812
cg00673191 0.3909065
cg00739120 0.201787
cg00795812 0.9159547
cg00899659 0.3026915
cg01031251 0.9022334
cg01124420 0.4824218
cg01182697 0.2347513
cg01278291 0.488315
cg01344171 0.6287959
cg01441777 0.4976284

Total number of rows: 96

Table truncated, full table size 1 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap