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Sample GSM1320789 Query DataSets for GSM1320789
Status Public on Feb 04, 2014
Title genomic DNA from EDTA, o/n at 4C Human whole blood (3093EDTA4C)
Sample type genomic
Source name EDTA, o/n at 4C Human whole blood 3093EDTA4C
Organism Homo sapiens
Characteristics sample type: Human whole blood
disease state: normal
sample subtype: EDTA, o/n at 4C
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 3093EDTA4C
EDTA, o/n at 4C Human whole blood 3093EDTA4C
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.8926456
foxp3DMR1in 0.9654346
foxp3DMRpro 0.9100438
cg00071250 0.4260412
cg00226923 0.9589099
cg00431549 0.05591172
cg00491404 0.797621
cg00546897 0.8502563
cg00554250 0.1377778
cg00620024 0.5986976
cg00673191 0.4772448
cg00739120 0.2770379
cg00795812 0.8872543
cg00899659 0.4196433
cg01031251 0.9055749
cg01124420 0.5285082
cg01182697 0.2787244
cg01278291 0.5225023
cg01344171 0.6748944
cg01441777 0.5949931

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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