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Sample GSM1320785 Query DataSets for GSM1320785
Status Public on Feb 04, 2014
Title genomic DNA from Heparin, Fresh Human whole blood (3021HepFr)
Sample type genomic
Source name Heparin, Fresh Human whole blood 3021HepFr
Organism Homo sapiens
Characteristics sample type: Human whole blood
disease state: normal
sample subtype: Heparin, Fresh
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 3021HepFr
Heparin, Fresh Human whole blood 3021HepFr
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.8938428
foxp3DMR1in 0.9585819
foxp3DMRpro 0.8897464
cg00071250 0.4418441
cg00226923 0.9489144
cg00431549 0.03222831
cg00491404 0.6858262
cg00546897 0.7603753
cg00554250 0.1766671
cg00620024 0.5146293
cg00673191 0.5547722
cg00739120 0.4510997
cg00795812 0.8362873
cg00899659 0.4909891
cg01031251 0.9195331
cg01124420 0.4658482
cg01182697 0.3622348
cg01278291 0.588287
cg01344171 0.4801982
cg01441777 0.5714605

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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