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Sample GSM1320783 Query DataSets for GSM1320783
Status Public on Feb 04, 2014
Title genomic DNA from Heparin, o/n at 4C Human whole blood (3045Hep4C)
Sample type genomic
Source name Heparin, o/n at 4C Human whole blood 3045Hep4C
Organism Homo sapiens
Characteristics sample type: Human whole blood
disease state: normal
sample subtype: Heparin, o/n at 4C
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 3045Hep4C
Heparin, o/n at 4C Human whole blood 3045Hep4C
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.9544597
foxp3DMR1in 0.965095
foxp3DMRpro 0.9536963
cg00071250 0.6730727
cg00226923 0.9637458
cg00431549 0.04334203
cg00491404 0.7820987
cg00546897 0.7022406
cg00554250 0.09290994
cg00620024 0.7690166
cg00673191 0.3631566
cg00739120 0.2602836
cg00795812 0.9461069
cg00899659 0.2694925
cg01031251 0.8776674
cg01124420 0.620541
cg01182697 0.2224061
cg01278291 0.3664123
cg01344171 0.6075286
cg01441777 0.4571375

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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