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Sample GSM1320769 Query DataSets for GSM1320769
Status Public on Feb 04, 2014
Title genomic DNA from Citrate, o/n at room temp Human whole blood (3159CitRt)
Sample type genomic
Source name Citrate, o/n at room temp Human whole blood 3159CitRt
Organism Homo sapiens
Characteristics sample type: Human whole blood
disease state: normal
sample subtype: Citrate, o/n at room temp
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 3159CitRt
Citrate, o/n at room temp Human whole blood 3159CitRt
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.9508016
foxp3DMR1in 0.9644396
foxp3DMRpro 0.9181473
cg00071250 0.639948
cg00226923 0.9628404
cg00431549 0.04551766
cg00491404 0.8045676
cg00546897 0.6663381
cg00554250 0.113283
cg00620024 0.7389965
cg00673191 0.4151833
cg00739120 0.2651365
cg00795812 0.9360152
cg00899659 0.202533
cg01031251 0.8726489
cg01124420 0.605602
cg01182697 0.2049622
cg01278291 0.3133495
cg01344171 0.4630522
cg01441777 0.5189847

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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