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Sample GSM1320762 Query DataSets for GSM1320762
Status Public on Feb 04, 2014
Title genomic DNA from Pan-NK cells Purified WBC subtype (NKpan1869)
Sample type genomic
Source name Pan-NK cells Purified WBC subtype NKpan1869
Organism Homo sapiens
Characteristics sample type: Purified WBC subtype
disease state: normal
sample subtype: Pan-NK cells
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description NKpan1869
Pan-NK cells Purified WBC subtype NKpan1869
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.2442071
foxp3DMR1in 0.9497911
foxp3DMRpro 0.9065644
cg00071250 0.05026802
cg00226923 0.9570438
cg00431549 0.0316593
cg00491404 0.2329922
cg00546897 0.9434608
cg00554250 0.1251994
cg00620024 0.7884452
cg00673191 0.7288225
cg00739120 0.2301838
cg00795812 0.8367954
cg00899659 0.5353849
cg01031251 0.9541569
cg01124420 0.5543138
cg01182697 0.2506327
cg01278291 0.772695
cg01344171 0.6184063
cg01441777 0.5097656

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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