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Sample GSM1320761 Query DataSets for GSM1320761
Status Public on Feb 04, 2014
Title genomic DNA from Moderate T-cell Lymphopenia Reconstruction mixture (MTpen)
Sample type genomic
Source name Moderate T-cell Lymphopenia Reconstruction mixture MTpen
Organism Homo sapiens
Characteristics sample type: Reconstruction mixture
disease state: normal
sample subtype: Moderate T-cell Lymphopenia
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description MTpen
Moderate T-cell Lymphopenia Reconstruction mixture MTpen
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.9727857
foxp3DMR1in 0.9632376
foxp3DMRpro 0.9671659
cg00071250 0.7902368
cg00226923 0.9690484
cg00431549 0.03820157
cg00491404 0.8475568
cg00546897 0.6950597
cg00554250 0.08269031
cg00620024 0.885933
cg00673191 0.4138549
cg00739120 0.1946677
cg00795812 0.9518226
cg00899659 0.1611043
cg01031251 0.8783897
cg01124420 0.6249972
cg01182697 0.1098249
cg01278291 0.3267058
cg01344171 0.5885614
cg01441777 0.4102595

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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