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Sample GSM1320759 Query DataSets for GSM1320759
Status Public on Feb 04, 2014
Title genomic DNA from Heparin, o/n at room temp Human whole blood (3159HepRt)
Sample type genomic
Source name Heparin, o/n at room temp Human whole blood 3159HepRt
Organism Homo sapiens
Characteristics sample type: Human whole blood
disease state: normal
sample subtype: Heparin, o/n at room temp
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 3159HepRt
Heparin, o/n at room temp Human whole blood 3159HepRt
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.9492226
foxp3DMR1in 0.9684562
foxp3DMRpro 0.9315428
cg00071250 0.5962638
cg00226923 0.9643969
cg00431549 0.04689172
cg00491404 0.8026736
cg00546897 0.8001109
cg00554250 0.1090008
cg00620024 0.7287749
cg00673191 0.4306821
cg00739120 0.2666284
cg00795812 0.9262115
cg00899659 0.2748111
cg01031251 0.870421
cg01124420 0.5448898
cg01182697 0.1803457
cg01278291 0.3742146
cg01344171 0.6451927
cg01441777 0.5702338

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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