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Sample GSM1320756 Query DataSets for GSM1320756
Status Public on Feb 04, 2014
Title genomic DNA from Citrate, Fresh Human whole blood (3045CitFr)
Sample type genomic
 
Source name Citrate, Fresh Human whole blood 3045CitFr
Organism Homo sapiens
Characteristics sample type: Human whole blood
disease state: normal
sample subtype: Citrate, Fresh
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 3045CitFr
Citrate, Fresh Human whole blood 3045CitFr
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
 
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
ID_REF
VALUE Average Beta (0-1 constrained), not normalized

Data table
ID_REF VALUE
cd3zDMR 0.9571643
foxp3DMR1in 0.9664971
foxp3DMRpro 0.9590889
cg00071250 0.6897244
cg00226923 0.9641274
cg00431549 0.04315045
cg00491404 0.8090189
cg00546897 0.6927524
cg00554250 0.1073037
cg00620024 0.73898
cg00673191 0.3711443
cg00739120 0.306007
cg00795812 0.9403553
cg00899659 0.2655709
cg01031251 0.8780382
cg01124420 0.5626814
cg01182697 0.2046652
cg01278291 0.4292682
cg01344171 0.6866371
cg01441777 0.4714991

Total number of rows: 96

Table truncated, full table size 1 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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