GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1320752 Query DataSets for GSM1320752
Status Public on Feb 04, 2014
Title genomic DNA from EDTA, o/n at 4C Human whole blood (3177EDTA4C)
Sample type genomic
Source name EDTA, o/n at 4C Human whole blood 3177EDTA4C
Organism Homo sapiens
Characteristics sample type: Human whole blood
disease state: normal
sample subtype: EDTA, o/n at 4C
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 3177EDTA4C
EDTA, o/n at 4C Human whole blood 3177EDTA4C
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.8801143
foxp3DMR1in 0.9626698
foxp3DMRpro 0.8876392
cg00071250 0.3749658
cg00226923 0.9588512
cg00431549 0.05483854
cg00491404 0.7722059
cg00546897 0.8740337
cg00554250 0.1825241
cg00620024 0.5918546
cg00673191 0.4899108
cg00739120 0.3527163
cg00795812 0.8531575
cg00899659 0.3960601
cg01031251 0.9161469
cg01124420 0.4228645
cg01182697 0.2789809
cg01278291 0.5139241
cg01344171 0.7016152
cg01441777 0.6501429

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap