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Sample GSM1320739 Query DataSets for GSM1320739
Status Public on Feb 04, 2014
Title genomic DNA from Monocytosis Reconstruction mixture (Mosis)
Sample type genomic
Source name Monocytosis Reconstruction mixture Mosis
Organism Homo sapiens
Characteristics sample type: Reconstruction mixture
disease state: normal
sample subtype: Monocytosis
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description Mosis
Monocytosis Reconstruction mixture Mosis
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.9705729
foxp3DMR1in 0.9727438
foxp3DMRpro 0.9641919
cg00071250 0.7434587
cg00226923 0.9722592
cg00431549 0.04292489
cg00491404 0.873048
cg00546897 0.5884745
cg00554250 0.09747307
cg00620024 0.7614903
cg00673191 0.4799965
cg00739120 0.2020761
cg00795812 0.9355693
cg00899659 0.165123
cg01031251 0.9028454
cg01124420 0.637327
cg01182697 0.1335788
cg01278291 0.3745055
cg01344171 0.648095
cg01441777 0.4405025

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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