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Sample GSM1320738 Query DataSets for GSM1320738
Status Public on Feb 04, 2014
Title genomic DNA from Heparin, o/n at -80C Human whole blood (3177Hep80)
Sample type genomic
Source name Heparin, o/n at -80C Human whole blood 3177Hep80
Organism Homo sapiens
Characteristics sample type: Human whole blood
disease state: normal
sample subtype: Heparin, o/n at -80C
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 3177Hep80
Heparin, o/n at -80C Human whole blood 3177Hep80
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.8677411
foxp3DMR1in 0.9717089
foxp3DMRpro 0.8979434
cg00071250 0.4293127
cg00226923 0.9588512
cg00431549 0.06162111
cg00491404 0.756883
cg00546897 0.895112
cg00554250 0.18006
cg00620024 0.5557393
cg00673191 0.5556005
cg00739120 0.3427826
cg00795812 0.8532773
cg00899659 0.4817549
cg01031251 0.9295136
cg01124420 0.4571918
cg01182697 0.3539399
cg01278291 0.5667645
cg01344171 0.7591821
cg01441777 0.7164096

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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