GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1320737 Query DataSets for GSM1320737
Status Public on Feb 04, 2014
Title genomic DNA from Normal Reconstruction mixture Reconstruction mixture (NormMix)
Sample type genomic
Source name Normal Reconstruction mixture Reconstruction mixture NormMix
Organism Homo sapiens
Characteristics sample type: Reconstruction mixture
disease state: normal
sample subtype: Normal Reconstruction mixture
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description NormMix
Normal Reconstruction mixture Reconstruction mixture NormMix
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.9550128
foxp3DMR1in 0.9690061
foxp3DMRpro 0.9568127
cg00071250 0.6871908
cg00226923 0.968053
cg00431549 0.04503085
cg00491404 0.8562989
cg00546897 0.6852264
cg00554250 0.128109
cg00620024 0.7596366
cg00673191 0.4226043
cg00739120 0.1810792
cg00795812 0.9410704
cg00899659 0.2476973
cg01031251 0.9019212
cg01124420 0.5870218
cg01182697 0.218595
cg01278291 0.3888069
cg01344171 0.6116874
cg01441777 0.5500142

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap