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Sample GSM1320725 Query DataSets for GSM1320725
Status Public on Feb 04, 2014
Title genomic DNA from Severe T-cell Lymphopenia Reconstruction mixture (STpen)
Sample type genomic
Source name Severe T-cell Lymphopenia Reconstruction mixture STpen
Organism Homo sapiens
Characteristics sample type: Reconstruction mixture
disease state: normal
sample subtype: Severe T-cell Lymphopenia
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description STpen
Severe T-cell Lymphopenia Reconstruction mixture STpen
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.9752893
foxp3DMR1in 0.9727641
foxp3DMRpro 0.9714457
cg00071250 0.8287682
cg00226923 0.9642012
cg00431549 0.02748791
cg00491404 0.8174554
cg00546897 0.6391143
cg00554250 0.09411504
cg00620024 0.8905457
cg00673191 0.4352794
cg00739120 0.1907846
cg00795812 0.9573714
cg00899659 0.1030176
cg01031251 0.889868
cg01124420 0.6488998
cg01182697 0.09297589
cg01278291 0.2242124
cg01344171 0.6193221
cg01441777 0.3628877

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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