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Sample GSM1320723 Query DataSets for GSM1320723
Status Public on Feb 04, 2014
Title genomic DNA from Granulocytes Purified WBC subtype (Gran1146)
Sample type genomic
Source name Granulocytes Purified WBC subtype Gran1146
Organism Homo sapiens
Characteristics sample type: Purified WBC subtype
disease state: normal
sample subtype: Granulocytes
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description Gran1146
Granulocytes Purified WBC subtype Gran1146
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.9890549
foxp3DMR1in 0.9793711
foxp3DMRpro 0.9671395
cg00071250 0.938054
cg00226923 0.9801129
cg00431549 0.02293984
cg00491404 0.8891456
cg00546897 0.5698962
cg00554250 0.06274613
cg00620024 0.9265684
cg00673191 0.2411415
cg00739120 0.1136976
cg00795812 0.9859172
cg00899659 0.02316015
cg01031251 0.8621833
cg01124420 0.7731333
cg01182697 0.03915453
cg01278291 0.1738251
cg01344171 0.6269143
cg01441777 0.4821083

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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