GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1320718 Query DataSets for GSM1320718
Status Public on Feb 04, 2014
Title genomic DNA from Citrate, o/n at 4C Human whole blood (3159Cit4C)
Sample type genomic
Source name Citrate, o/n at 4C Human whole blood 3159Cit4C
Organism Homo sapiens
Characteristics sample type: Human whole blood
disease state: normal
sample subtype: Citrate, o/n at 4C
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 3159Cit4C
Citrate, o/n at 4C Human whole blood 3159Cit4C
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.9532174
foxp3DMR1in 0.9692684
foxp3DMRpro 0.9260579
cg00071250 0.6788459
cg00226923 0.9582573
cg00431549 0.05040377
cg00491404 0.8290577
cg00546897 0.7318118
cg00554250 0.1053201
cg00620024 0.7657683
cg00673191 0.4142784
cg00739120 0.3271761
cg00795812 0.9469544
cg00899659 0.2500227
cg01031251 0.8765842
cg01124420 0.6034671
cg01182697 0.2006487
cg01278291 0.334601
cg01344171 0.702108
cg01441777 0.5402548

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap