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Sample GSM1320713 Query DataSets for GSM1320713
Status Public on Feb 04, 2014
Title genomic DNA from Citrate, Fresh Human whole blood (3082CitFr)
Sample type genomic
Source name Citrate, Fresh Human whole blood 3082CitFr
Organism Homo sapiens
Characteristics sample type: Human whole blood
disease state: normal
sample subtype: Citrate, Fresh
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 3082CitFr
Citrate, Fresh Human whole blood 3082CitFr
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.9527131
foxp3DMR1in 0.970948
foxp3DMRpro 0.9412215
cg00071250 0.669286
cg00226923 0.9711395
cg00431549 0.05840429
cg00491404 0.8806222
cg00546897 0.8207613
cg00554250 0.1247306
cg00620024 0.5660922
cg00673191 0.4692744
cg00739120 0.3432881
cg00795812 0.9340436
cg00899659 0.4235196
cg01031251 0.9085856
cg01124420 0.6104043
cg01182697 0.1750783
cg01278291 0.5335396
cg01344171 0.6571051
cg01441777 0.480835

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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