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Sample GSM1320699 Query DataSets for GSM1320699
Status Public on Feb 04, 2014
Title genomic DNA from Citrate, o/n at -80C Human whole blood (3093Cit80)
Sample type genomic
Source name Citrate, o/n at -80C Human whole blood 3093Cit80
Organism Homo sapiens
Characteristics sample type: Human whole blood
disease state: normal
sample subtype: Citrate, o/n at -80C
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 3093Cit80
Citrate, o/n at -80C Human whole blood 3093Cit80
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.9126334
foxp3DMR1in 0.9648158
foxp3DMRpro 0.9070748
cg00071250 0.4176658
cg00226923 0.9549615
cg00431549 0.05369718
cg00491404 0.7895981
cg00546897 0.8747637
cg00554250 0.145107
cg00620024 0.6112118
cg00673191 0.4773352
cg00739120 0.2792541
cg00795812 0.8943884
cg00899659 0.3971973
cg01031251 0.9030985
cg01124420 0.5050872
cg01182697 0.3187005
cg01278291 0.514707
cg01344171 0.7217998
cg01441777 0.5848774

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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