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Sample GSM1320697 Query DataSets for GSM1320697
Status Public on Feb 04, 2014
Title genomic DNA from EDTA, Fresh Human whole blood (3093EDTAFr)
Sample type genomic
Source name EDTA, Fresh Human whole blood 3093EDTAFr
Organism Homo sapiens
Characteristics sample type: Human whole blood
disease state: normal
sample subtype: EDTA, Fresh
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 3093EDTAFr
EDTA, Fresh Human whole blood 3093EDTAFr
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.9181467
foxp3DMR1in 0.9633279
foxp3DMRpro 0.8996845
cg00071250 0.4090602
cg00226923 0.953639
cg00431549 0.06905482
cg00491404 0.7955074
cg00546897 0.8528587
cg00554250 0.1369358
cg00620024 0.6165383
cg00673191 0.4833504
cg00739120 0.2818067
cg00795812 0.8925152
cg00899659 0.4059777
cg01031251 0.9134436
cg01124420 0.5320011
cg01182697 0.339782
cg01278291 0.4949869
cg01344171 0.7131199
cg01441777 0.5950214

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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