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Sample GSM1320694 Query DataSets for GSM1320694
Status Public on Feb 04, 2014
Title genomic DNA from Granulocytopenia Reconstruction mixture (Gpen)
Sample type genomic
Source name Granulocytopenia Reconstruction mixture Gpen
Organism Homo sapiens
Characteristics sample type: Reconstruction mixture
disease state: normal
sample subtype: Granulocytopenia
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description Gpen
Granulocytopenia Reconstruction mixture Gpen
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.8487879
foxp3DMR1in 0.9470885
foxp3DMRpro 0.9310595
cg00071250 0.3258317
cg00226923 0.9051619
cg00431549 0.07174834
cg00491404 0.7475234
cg00546897 0.8566651
cg00554250 0.1561277
cg00620024 0.5387875
cg00673191 0.7353975
cg00739120 0.3602029
cg00795812 0.7095312
cg00899659 0.4180684
cg01031251 0.9477146
cg01124420 0.3579703
cg01182697 0.3151748
cg01278291 0.6237257
cg01344171 0.7497543
cg01441777 0.6274574

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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