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Sample GSM1320689 Query DataSets for GSM1320689
Status Public on Feb 04, 2014
Title genomic DNA from CD16- NK cells Purified WBC subtype (NK16m2608)
Sample type genomic
Source name CD16- NK cells Purified WBC subtype NK16m2608
Organism Homo sapiens
Characteristics sample type: Purified WBC subtype
disease state: normal
sample subtype: CD16- NK cells
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description NK16m2608
CD16- NK cells Purified WBC subtype NK16m2608
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.8419526
foxp3DMR1in 0.9630193
foxp3DMRpro 0.9556941
cg00071250 0.07858013
cg00226923 0.9666942
cg00431549 0.02318116
cg00491404 0.102761
cg00546897 0.9667947
cg00554250 0.117534
cg00620024 0.8870891
cg00673191 0.8338016
cg00739120 0.1690508
cg00795812 0.9487333
cg00899659 0.3849496
cg01031251 0.968147
cg01124420 0.6394839
cg01182697 0.1463352
cg01278291 0.8386418
cg01344171 0.7495708
cg01441777 0.5892497

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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