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Sample GSM1320683 Query DataSets for GSM1320683
Status Public on Feb 04, 2014
Title genomic DNA from EDA, o/n at -80C Human whole blood (3093EDTA80)
Sample type genomic
Source name EDA, o/n at -80C Human whole blood 3093EDTA80
Organism Homo sapiens
Characteristics sample type: Human whole blood
disease state: normal
sample subtype: EDA, o/n at -80C
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 3093EDTA80
EDA, o/n at -80C Human whole blood 3093EDTA80
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.9104483
foxp3DMR1in 0.9595538
foxp3DMRpro 0.8897921
cg00071250 0.4125381
cg00226923 0.9495267
cg00431549 0.05509254
cg00491404 0.7739319
cg00546897 0.8556118
cg00554250 0.1201534
cg00620024 0.5900834
cg00673191 0.4713532
cg00739120 0.3160004
cg00795812 0.875301
cg00899659 0.3842321
cg01031251 0.8943492
cg01124420 0.5051137
cg01182697 0.2987034
cg01278291 0.5041202
cg01344171 0.6814963
cg01441777 0.5804986

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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