GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1320681 Query DataSets for GSM1320681
Status Public on Feb 04, 2014
Title genomic DNA from B-cell Lymphopenia Reconstruction mixture (Bpen)
Sample type genomic
Source name B-cell Lymphopenia Reconstruction mixture Bpen
Organism Homo sapiens
Characteristics sample type: Reconstruction mixture
disease state: normal
sample subtype: B-cell Lymphopenia
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description Bpen
B-cell Lymphopenia Reconstruction mixture Bpen
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.9456502
foxp3DMR1in 0.9649563
foxp3DMRpro 0.9557052
cg00071250 0.5889108
cg00226923 0.963389
cg00431549 0.04548646
cg00491404 0.8476144
cg00546897 0.6754485
cg00554250 0.122621
cg00620024 0.6540803
cg00673191 0.4299248
cg00739120 0.2560745
cg00795812 0.9225776
cg00899659 0.2822998
cg01031251 0.9033517
cg01124420 0.5592145
cg01182697 0.2130579
cg01278291 0.399592
cg01344171 0.6516125
cg01441777 0.4982913

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap