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Sample GSM1320680 Query DataSets for GSM1320680
Status Public on Feb 04, 2014
Title genomic DNA from EDTA, Fresh Human whole blood (3177EDTAFr)
Sample type genomic
Source name EDTA, Fresh Human whole blood 3177EDTAFr
Organism Homo sapiens
Characteristics sample type: Human whole blood
disease state: normal
sample subtype: EDTA, Fresh
Treatment protocol Leukocyte subtypes were purified via magnetic activated cell sorting (MACS) using kits from Miltenyi Biotec
Growth protocol Not applicable
Extracted molecule genomic DNA
Extraction protocol Genomic DNA was extracted using QIAGEN Dneasy blood and tissue kit according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridized to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Description 3177EDTAFr
EDTA, Fresh Human whole blood 3177EDTAFr
Illumina VeraCode GGMA
Data processing Illumina GenomeStudio v2010.3
Unmethylated and methylated signal intensities are reported in a supplementary file on the Series record.
Submission date Feb 04, 2014
Last update date Feb 04, 2014
Contact name William P Accomando
Organization name Harvard School of Public Health
Department Epidemiology
Street address Kresge Bldg 911, 677 Huntington Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platform ID GPL18246
Series (2)
GSE54647 VeraCode GoldenGate Methylation Assay microarray data for purified human leukocytes, reconstruction mixtures and human whole blood samples
GSE54671 Quantitative reconstruction of leukocyte subsets using DNA methylation

Data table header descriptions
VALUE Average Beta (0-1 constrained), not normalized

Data table
cd3zDMR 0.9053922
foxp3DMR1in 0.9657906
foxp3DMRpro 0.8731011
cg00071250 0.4127469
cg00226923 0.9515599
cg00431549 0.08929321
cg00491404 0.7862486
cg00546897 0.8743282
cg00554250 0.1621445
cg00620024 0.6180494
cg00673191 0.523317
cg00739120 0.3354018
cg00795812 0.8449934
cg00899659 0.4658155
cg01031251 0.9161
cg01124420 0.4340932
cg01182697 0.4059632
cg01278291 0.5928699
cg01344171 0.7283358
cg01441777 0.6866131

Total number of rows: 96

Table truncated, full table size 1 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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